Views

Phenopackets service

class chord_metadata_service.phenopackets.api_views.BiosampleViewSet(**kwargs)

get: Return a list of all existing biosamples

post: Create a new biosample

serializer_class

alias of chord_metadata_service.phenopackets.serializers.BiosampleSerializer

class chord_metadata_service.phenopackets.api_views.DiagnosisViewSet(**kwargs)

get: Return a list of all existing diagnoses

post: Create a new diagnosis

serializer_class

alias of chord_metadata_service.phenopackets.serializers.DiagnosisSerializer

class chord_metadata_service.phenopackets.api_views.DiseaseViewSet(**kwargs)

get: Return a list of all existing diseases

post: Create a new disease

serializer_class

alias of chord_metadata_service.phenopackets.serializers.DiseaseSerializer

class chord_metadata_service.phenopackets.api_views.ExtendedPhenopacketsModelViewSet(**kwargs)
class chord_metadata_service.phenopackets.api_views.GeneViewSet(**kwargs)

get: Return a list of all existing genes

post: Create a new gene

serializer_class

alias of chord_metadata_service.phenopackets.serializers.GeneSerializer

class chord_metadata_service.phenopackets.api_views.GenomicInterpretationViewSet(**kwargs)

get: Return a list of all existing genomic interpretations

post: Create a new genomic interpretation

serializer_class

alias of chord_metadata_service.phenopackets.serializers.GenomicInterpretationSerializer

class chord_metadata_service.phenopackets.api_views.HtsFileViewSet(**kwargs)

get: Return a list of all existing HTS files

post: Create a new HTS file

serializer_class

alias of chord_metadata_service.phenopackets.serializers.HtsFileSerializer

class chord_metadata_service.phenopackets.api_views.InterpretationViewSet(**kwargs)

get: Return a list of all existing interpretations

post: Create a new interpretation

serializer_class

alias of chord_metadata_service.phenopackets.serializers.InterpretationSerializer

class chord_metadata_service.phenopackets.api_views.MetaDataViewSet(**kwargs)

get: Return a list of all existing metadata records

post: Create a new metadata record

serializer_class

alias of chord_metadata_service.phenopackets.serializers.MetaDataSerializer

class chord_metadata_service.phenopackets.api_views.PhenopacketViewSet(**kwargs)

get: Return a list of all existing phenopackets

post: Create a new phenopacket

serializer_class

alias of chord_metadata_service.phenopackets.serializers.PhenopacketSerializer

class chord_metadata_service.phenopackets.api_views.PhenopacketsModelViewSet(**kwargs)
dispatch(*args, **kwargs)

.dispatch() is pretty much the same as Django’s regular dispatch, but with extra hooks for startup, finalize, and exception handling.

pagination_class

alias of chord_metadata_service.restapi.pagination.LargeResultsSetPagination

class chord_metadata_service.phenopackets.api_views.PhenotypicFeatureViewSet(**kwargs)

get: Return a list of all existing phenotypic features

post: Create a new phenotypic feature

serializer_class

alias of chord_metadata_service.phenopackets.serializers.PhenotypicFeatureSerializer

class chord_metadata_service.phenopackets.api_views.ProcedureViewSet(**kwargs)

get: Return a list of all existing procedures

post: Create a new procedure

serializer_class

alias of chord_metadata_service.phenopackets.serializers.ProcedureSerializer

class chord_metadata_service.phenopackets.api_views.VariantViewSet(**kwargs)

get: Return a list of all existing variants

post: Create a new variant

serializer_class

alias of chord_metadata_service.phenopackets.serializers.VariantSerializer

chord_metadata_service.phenopackets.api_views.get_chord_phenopacket_schema(self, request, *args, **kwargs)

get: Chord phenopacket schema that can be shared with data providers.

Patients service

class chord_metadata_service.patients.api_views.IndividualViewSet(**kwargs)

get: Return a list of all existing individuals

post: Create a new individual

dispatch(*args, **kwargs)

.dispatch() is pretty much the same as Django’s regular dispatch, but with extra hooks for startup, finalize, and exception handling.

pagination_class

alias of chord_metadata_service.restapi.pagination.LargeResultsSetPagination

serializer_class

alias of chord_metadata_service.patients.serializers.IndividualSerializer

Mcode service

class chord_metadata_service.mcode.api_views.CancerConditionViewSet(**kwargs)
serializer_class

alias of chord_metadata_service.mcode.serializers.CancerConditionSerializer

class chord_metadata_service.mcode.api_views.CancerGeneticVariantViewSet(**kwargs)
serializer_class

alias of chord_metadata_service.mcode.serializers.CancerGeneticVariantSerializer

class chord_metadata_service.mcode.api_views.CancerRelatedProcedureViewSet(**kwargs)
serializer_class

alias of chord_metadata_service.mcode.serializers.CancerRelatedProcedureSerializer

class chord_metadata_service.mcode.api_views.GeneticSpecimenViewSet(**kwargs)
serializer_class

alias of chord_metadata_service.mcode.serializers.GeneticSpecimenSerializer

class chord_metadata_service.mcode.api_views.GenomicRegionStudiedViewSet(**kwargs)
serializer_class

alias of chord_metadata_service.mcode.serializers.GenomicRegionStudiedSerializer

class chord_metadata_service.mcode.api_views.GenomicsReportViewSet(**kwargs)
serializer_class

alias of chord_metadata_service.mcode.serializers.GenomicsReportSerializer

class chord_metadata_service.mcode.api_views.LabsVitalViewSet(**kwargs)
serializer_class

alias of chord_metadata_service.mcode.serializers.LabsVitalSerializer

class chord_metadata_service.mcode.api_views.MCodePacketViewSet(**kwargs)
serializer_class

alias of chord_metadata_service.mcode.serializers.MCodePacketSerializer

class chord_metadata_service.mcode.api_views.McodeModelViewSet(**kwargs)
dispatch(*args, **kwargs)

.dispatch() is pretty much the same as Django’s regular dispatch, but with extra hooks for startup, finalize, and exception handling.

pagination_class

alias of chord_metadata_service.restapi.pagination.LargeResultsSetPagination

class chord_metadata_service.mcode.api_views.MedicationStatementViewSet(**kwargs)
serializer_class

alias of chord_metadata_service.mcode.serializers.MedicationStatementSerializer

class chord_metadata_service.mcode.api_views.TNMStagingViewSet(**kwargs)
serializer_class

alias of chord_metadata_service.mcode.serializers.TNMStagingSerializer

chord_metadata_service.mcode.api_views.get_mcode_schema(self, request, *args, **kwargs)

get: Mcodepacket schema

Experiments service

class chord_metadata_service.experiments.api_views.ExperimentViewSet(**kwargs)

get: Return a list of all existing experiments

post: Create a new experiment

dispatch(*args, **kwargs)

.dispatch() is pretty much the same as Django’s regular dispatch, but with extra hooks for startup, finalize, and exception handling.

pagination_class

alias of chord_metadata_service.restapi.pagination.LargeResultsSetPagination

serializer_class

alias of chord_metadata_service.experiments.serializers.ExperimentSerializer

chord_metadata_service.experiments.api_views.get_experiment_schema(self, request, *args, **kwargs)

get: Experiment schema

Resources service

class chord_metadata_service.resources.api_views.ResourceViewSet(**kwargs)

get: Return a list of all existing resources

post: Create a new resource

pagination_class

alias of chord_metadata_service.restapi.pagination.LargeResultsSetPagination

serializer_class

alias of chord_metadata_service.resources.serializers.ResourceSerializer

CHORD service