Experiments API¶
Data types endpoints¶
Experiments
api/experiments
GET: list of Experiments
api/experiments/{id}
GET: single Experiment
The following filters can be applied:
id (exact match, single):
/api/experiments?id=100
reference_registry_id (single, case-sensitive, exact match):
/api/experiments?reference_registry_id=RR10015
study_type (single, case-insensitive, partial match):
/api/experiments?study_type=genomics
experiment_type (single, case-insensitive, partial match):
/api/experiments?experiment_type=wes
molecule (single, case-insensitive, partial match):
/api/experiments?molecule=protein
library_strategy (single, case-insensitive, partial match):
/api/experiments?library_strategy=wes
library_source (single, case-insensitive, partial match):
/api/experiments?library_source=genomic
library_selection (single, case-insensitive, partial match):
/api/experiments?library_selection=random
library_layout (single, case-insensitive, partial match):
/api/experiments?library_layout=single
extraction_protocol (single, case-insensitive, partial match):
/api/experiments?extraction_protocol=exome capture
biosample (single, exact match), takes biosample id, returns all experimentsrelated to a specified biosample:
/api/experiments?biosample=1005
extra_properties (case-insensitive, partial match):
/api/experiments?extra_properties=test
datasets (single or multiple list of datasets titles separated by comma):
/api/experiments?datasets=dataset_1,dataset_2
Experiment Results
api/experimentresults
GET: list of Experiment Results
api/experimentresults/{id}
GET: single Experiment Result
The following filters can be applied:
identifier (single, exact match):
/api/experimentresults?identifier=RN-1001
description (single, case-insensitive, partial match):
/api/experimentresults?description=test
filename (single, case-insensitive, partial match):
/api/experimentresults?filename=1001_rnaseq.bw
genome_assembly_id (single, case-insensitive, exact match):
/api/experimentresults?genome_assembly_id=GRCh37
options: GRCh37, GRCh38, GRCm38, GRCm39file_format (single, case-insensitive, exact match):
/api/experimentresults?file_format=VCF
data_output_type (single, case-insensitive, partial match):
/api/experimentresults?data_output_type=raw data
usage (single, case-insensitive, partial match):
/api/experimentresults?usage=visualized
created_by (single, case-insensitive, partial match):
/api/experimentresults?created_by=Admin
extra_properties (case-insensitive, partial match):
/api/experimentresults?extra_properties=test
datasets (single or multiple list of datasets titles separated by comma):
/api/experimentresults?datasets=dataset_1,dataset_2