Views¶
Phenopackets service¶
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class
chord_metadata_service.phenopackets.api_views.BiosampleViewSet(**kwargs)¶ get: Return a list of all existing biosamples
post: Create a new biosample
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serializer_class¶ alias of
chord_metadata_service.phenopackets.serializers.BiosampleSerializer
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class
chord_metadata_service.phenopackets.api_views.DiagnosisViewSet(**kwargs)¶ get: Return a list of all existing diagnoses
post: Create a new diagnosis
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serializer_class¶ alias of
chord_metadata_service.phenopackets.serializers.DiagnosisSerializer
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class
chord_metadata_service.phenopackets.api_views.DiseaseViewSet(**kwargs)¶ get: Return a list of all existing diseases
post: Create a new disease
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serializer_class¶ alias of
chord_metadata_service.phenopackets.serializers.DiseaseSerializer
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class
chord_metadata_service.phenopackets.api_views.ExtendedPhenopacketsModelViewSet(**kwargs)¶
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class
chord_metadata_service.phenopackets.api_views.GeneViewSet(**kwargs)¶ get: Return a list of all existing genes
post: Create a new gene
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serializer_class¶ alias of
chord_metadata_service.phenopackets.serializers.GeneSerializer
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class
chord_metadata_service.phenopackets.api_views.GenomicInterpretationViewSet(**kwargs)¶ get: Return a list of all existing genomic interpretations
post: Create a new genomic interpretation
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serializer_class¶ alias of
chord_metadata_service.phenopackets.serializers.GenomicInterpretationSerializer
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class
chord_metadata_service.phenopackets.api_views.HtsFileViewSet(**kwargs)¶ get: Return a list of all existing HTS files
post: Create a new HTS file
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serializer_class¶ alias of
chord_metadata_service.phenopackets.serializers.HtsFileSerializer
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class
chord_metadata_service.phenopackets.api_views.InterpretationViewSet(**kwargs)¶ get: Return a list of all existing interpretations
post: Create a new interpretation
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serializer_class¶ alias of
chord_metadata_service.phenopackets.serializers.InterpretationSerializer
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class
chord_metadata_service.phenopackets.api_views.MetaDataViewSet(**kwargs)¶ get: Return a list of all existing metadata records
post: Create a new metadata record
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serializer_class¶ alias of
chord_metadata_service.phenopackets.serializers.MetaDataSerializer
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class
chord_metadata_service.phenopackets.api_views.PhenopacketViewSet(**kwargs)¶ get: Return a list of all existing phenopackets
post: Create a new phenopacket
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serializer_class¶ alias of
chord_metadata_service.phenopackets.serializers.PhenopacketSerializer
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class
chord_metadata_service.phenopackets.api_views.PhenopacketsModelViewSet(**kwargs)¶ -
dispatch(*args, **kwargs)¶ .dispatch() is pretty much the same as Django’s regular dispatch, but with extra hooks for startup, finalize, and exception handling.
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pagination_class¶ alias of
chord_metadata_service.restapi.pagination.LargeResultsSetPagination
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class
chord_metadata_service.phenopackets.api_views.PhenotypicFeatureViewSet(**kwargs)¶ get: Return a list of all existing phenotypic features
post: Create a new phenotypic feature
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serializer_class¶ alias of
chord_metadata_service.phenopackets.serializers.PhenotypicFeatureSerializer
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class
chord_metadata_service.phenopackets.api_views.ProcedureViewSet(**kwargs)¶ get: Return a list of all existing procedures
post: Create a new procedure
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serializer_class¶ alias of
chord_metadata_service.phenopackets.serializers.ProcedureSerializer
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class
chord_metadata_service.phenopackets.api_views.VariantViewSet(**kwargs)¶ get: Return a list of all existing variants
post: Create a new variant
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serializer_class¶ alias of
chord_metadata_service.phenopackets.serializers.VariantSerializer
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chord_metadata_service.phenopackets.api_views.get_chord_phenopacket_schema(self, request, *args, **kwargs)¶ get: Chord phenopacket schema that can be shared with data providers.
Patients service¶
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class
chord_metadata_service.patients.api_views.IndividualViewSet(**kwargs)¶ get: Return a list of all existing individuals
post: Create a new individual
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dispatch(*args, **kwargs)¶ .dispatch() is pretty much the same as Django’s regular dispatch, but with extra hooks for startup, finalize, and exception handling.
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pagination_class¶ alias of
chord_metadata_service.restapi.pagination.LargeResultsSetPagination
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serializer_class¶ alias of
chord_metadata_service.patients.serializers.IndividualSerializer
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class
chord_metadata_service.patients.api_views.PublicListIndividuals(**kwargs)¶ View to return only count of all individuals after filtering.
Mcode service¶
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class
chord_metadata_service.mcode.api_views.CancerConditionViewSet(**kwargs)¶ -
serializer_class¶ alias of
chord_metadata_service.mcode.serializers.CancerConditionSerializer
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class
chord_metadata_service.mcode.api_views.CancerGeneticVariantViewSet(**kwargs)¶ -
serializer_class¶ alias of
chord_metadata_service.mcode.serializers.CancerGeneticVariantSerializer
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class
chord_metadata_service.mcode.api_views.CancerRelatedProcedureViewSet(**kwargs)¶ -
serializer_class¶ alias of
chord_metadata_service.mcode.serializers.CancerRelatedProcedureSerializer
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class
chord_metadata_service.mcode.api_views.GeneticSpecimenViewSet(**kwargs)¶ -
serializer_class¶ alias of
chord_metadata_service.mcode.serializers.GeneticSpecimenSerializer
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class
chord_metadata_service.mcode.api_views.GenomicRegionStudiedViewSet(**kwargs)¶ -
serializer_class¶ alias of
chord_metadata_service.mcode.serializers.GenomicRegionStudiedSerializer
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class
chord_metadata_service.mcode.api_views.GenomicsReportViewSet(**kwargs)¶ -
serializer_class¶ alias of
chord_metadata_service.mcode.serializers.GenomicsReportSerializer
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class
chord_metadata_service.mcode.api_views.LabsVitalViewSet(**kwargs)¶ -
serializer_class¶ alias of
chord_metadata_service.mcode.serializers.LabsVitalSerializer
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class
chord_metadata_service.mcode.api_views.MCodePacketViewSet(**kwargs)¶ -
serializer_class¶ alias of
chord_metadata_service.mcode.serializers.MCodePacketSerializer
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class
chord_metadata_service.mcode.api_views.McodeModelViewSet(**kwargs)¶ -
dispatch(*args, **kwargs)¶ .dispatch() is pretty much the same as Django’s regular dispatch, but with extra hooks for startup, finalize, and exception handling.
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pagination_class¶ alias of
chord_metadata_service.restapi.pagination.LargeResultsSetPagination
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class
chord_metadata_service.mcode.api_views.MedicationStatementViewSet(**kwargs)¶ -
serializer_class¶ alias of
chord_metadata_service.mcode.serializers.MedicationStatementSerializer
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class
chord_metadata_service.mcode.api_views.TNMStagingViewSet(**kwargs)¶ -
serializer_class¶ alias of
chord_metadata_service.mcode.serializers.TNMStagingSerializer
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chord_metadata_service.mcode.api_views.get_mcode_schema(self, request, *args, **kwargs)¶ get: Mcodepacket schema
Experiments service¶
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class
chord_metadata_service.experiments.api_views.ExperimentViewSet(**kwargs)¶ get: Return a list of all existing experiments
post: Create a new experiment
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dispatch(*args, **kwargs)¶ .dispatch() is pretty much the same as Django’s regular dispatch, but with extra hooks for startup, finalize, and exception handling.
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pagination_class¶ alias of
chord_metadata_service.restapi.pagination.LargeResultsSetPagination
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serializer_class¶ alias of
chord_metadata_service.experiments.serializers.ExperimentSerializer
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chord_metadata_service.experiments.api_views.get_experiment_schema(self, request, *args, **kwargs)¶ get: Experiment schema
Resources service¶
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class
chord_metadata_service.resources.api_views.ResourceViewSet(**kwargs)¶ get: Return a list of all existing resources
post: Create a new resource
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pagination_class¶ alias of
chord_metadata_service.restapi.pagination.LargeResultsSetPagination
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serializer_class¶ alias of
chord_metadata_service.resources.serializers.ResourceSerializer
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